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ABOUT THIS RECORD

ID: MNEST041543
species: Solanum lycopersicum
miRNA family: MIR172
source: miRBase, original name: sly-MIR172b (MI0009977)

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCAT

miRNA*
 GTAGCATCATCAAGATTCATA

mismatches: 1
bulges: 0
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pre-miRNA
 ATGTAGCATCATCAAGATTCATACATGAAAATTAAGAGGCAAGGTTAAATATGTAGCTTTAATTTGAAATGAAAAATATAATATATCATGACCATGTCTA
TTTATTTCAAAGTGAGAATCTTGATGATGCTGCAT

dot-bracket secondary structure
((((((((((((((((((((.(((.(((((......(((((.(((((...(((((......((((........))))....)))))..))))).))))).
....)))))..))).))))))))))))))))))))


SIMILARITIES
miRBase tcc-MIR172e: 0.00000003

PMRD sly-miR172b: 1e-72

microPC miR172: 0.000002		UniProt no hits

RFAM mir-172: 0.0000005

Identical with: sly-miR172b from PMRD (MNEST054556)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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deep sequencing data evidence

references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"



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