ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR319
source: miRBase, original name: sly-MIR319 (MI0009978)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCC miRNA* AGCTTCTTTAGTCCACACA mismatches: 3 bulges: 1 |
pre-miRNA
GAGCTTCTTTAGTCCACACATGGGGAACGATAGGGTTCAATTTGCTGCCGACTCATTCATCCAAATGTTGAGGTCTTGATAATCGAGTGCCACCTCAGCA
ACTGAGTGAATGAAGCGGGAGTACAAGTTGAGTCTTGAGCTTCCTGTACTTGGACTGAAGGGAGCTCC
dot-bracket secondary structure
((((((((((((((((...(((((((.(..((((..((((((((((.(((..(((((((..((..(((((((((((((.....))))....)))))))))
..))..)))))))..))).))..))))))))..)))).).)))))))...))))))))).))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
GAGCTTCTTTAGTCCACACATGGGGAACGATAGGGTTCAATTTGCTGCCGACTCATTCATCCAAATGTTGAGGTCTTGATAATCGAGTGCCACCTCAGCA
ACTGAGTGAATGAAGCGGGAGTACAAGTTGAGTCTTGAGCTTCCTGTACTTGGACTGAAGGGAGCTCC
dot-bracket secondary structure
((((((((((((((((...(((((((.(..((((..((((((((((.(((..(((((((..((..(((((((((((((.....))))....)))))))))
..))..)))))))..))).))..))))))))..)))).).)))))))...))))))))).))))))).
SIMILARITIES| miRBase gma-MIR319b: 1e-17 PMRD gma-miR319b: 1e-17 microPC miR319: 4e-20 | UniProt no hits RFAM MIR159: 1e-88 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
