ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR395
source: miRBase, original name: sly-MIR395a (MI0008369)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGAAGTGTTTGGGGGAACTCC miRNA* AGTTCCCTTGACCACTTCATGA mismatches: 4 bulges: 0 |
pre-miRNA
AGGGCTTACTTTGATGTTGGAAGCCTTGCTGAAGTGTTTGGGGGAACTCCCGGGTTGACTTTGAAAATTACGCAAACAAGTATATATAAATGCATGAGTA
CGTATTAGCTAAAGATGATGAGTACAATATTGATTCATGTACCTTTGGAGTTCCCTTGACCACTTCATGAGAGCTTAATATTTGATTGTTTGAAGTCCT
dot-bracket secondary structure
(((((((((...(((((((..(((((((.(((((((.(..((((((((((.((((...(((((.....((((.(..((.((((......)))).))..).
)))).....)))))...((((((.((....))))))))..))))..))))))))))..).))))))))))).)))))))))).....))...)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
AGGGCTTACTTTGATGTTGGAAGCCTTGCTGAAGTGTTTGGGGGAACTCCCGGGTTGACTTTGAAAATTACGCAAACAAGTATATATAAATGCATGAGTA
CGTATTAGCTAAAGATGATGAGTACAATATTGATTCATGTACCTTTGGAGTTCCCTTGACCACTTCATGAGAGCTTAATATTTGATTGTTTGAAGTCCT
dot-bracket secondary structure
(((((((((...(((((((..(((((((.(((((((.(..((((((((((.((((...(((((.....((((.(..((.((((......)))).))..).
)))).....)))))...((((((.((....))))))))..))))..))))))))))..).))))))))))).)))))))))).....))...)))))))
SIMILARITIES| miRBase sly-MIR395b: 8e-22 PMRD sly-miR395a: 9e-111 microPC miR395: 0.0002 | UniProt no hits RFAM mir-395: 9e-19 |
Identical with: sly-miR395a from PMRD (MNEST054558) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
