miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST041551
species:
Solanum lycopersicum
source:
miRBase, original name:
sly-MIR1917
(
MI0008352
)
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTAATAAAGAGTGCTAAAGT
miRNA*
TTTAGGGACCTATATAAAGAGTGT
mismatches:
5
bulges:
3
View larger
pre-miRNA
TTTTAGCGGCATTAAATATTGAC
ATTAATAAAGAGTGCTAAAGT
CTTTACCGGTATTAGTTAAGTGTCATTAGAACCAATGTAGCTAAAGGC
TTTAGGGA
CCTATATAAAGAGTGT
CAATTGCCGCTAAAA
dot-bracket secondary structure
.((((((((((......((((((
(((.(((.((..(.(((((((
(((((.(..((((.(((..(......)..))).))))..).)))))))
))))).).
.)).)))....)))))
)))))))))))))).
SIMILARITIES
miRBase
no hits
PMRD
sly-miR1917
:
2e-70
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
sly-miR1917
from PMRD (
MNEST054564
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"