ABOUT THIS RECORDspecies: Solanum lycopersicum
source: miRBase, original name: sly-MIR5300 (MI0018477)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCCAGTCCAGGCATTCCAAC miRNA* TGGTATGCTTTGATTGGGAAAG mismatches: 4 bulges: 0 |
pre-miRNA
TGACCAAAATTCTTCTTCCCCAGTCCAGGCATTCCAACAGTTGATAACATCTAGATCTGCCAATACTTTGTATTTTTGTTCTTCTATTTTTCACATGACA
TCTTCAAAATCTACTATGAGCTTCATCATAAGCTAAGAAATGGTGAGTTTTGATGATGTGATGCCTAAAATAGGATTAAATGAAAGTACTAGTAAAAAGG
TGTTCAGATCTGGAGGTTATGTTAAGCTGGTGGTATGCTTTGATTGGGAAAGATGACTTAGGTCA
dot-bracket secondary structure
.((((.....((.((((.(((((((.((((((.(((.(((((.(((((.((((((((((..(((((((((((((((..((.(((((((((...(((.(((
((.((((((..((((((.(((((......))))).....))))))..)))))).))))).)))...)))))))))...))..))))))).......))))
)))))))))))))).)))))....))))).))).)))))).))))))).)))).))....)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T, Plant J. [Epub prior to print](2011)., "Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns"
TGACCAAAATTCTTCTTCCCCAGTCCAGGCATTCCAACAGTTGATAACATCTAGATCTGCCAATACTTTGTATTTTTGTTCTTCTATTTTTCACATGACA
TCTTCAAAATCTACTATGAGCTTCATCATAAGCTAAGAAATGGTGAGTTTTGATGATGTGATGCCTAAAATAGGATTAAATGAAAGTACTAGTAAAAAGG
TGTTCAGATCTGGAGGTTATGTTAAGCTGGTGGTATGCTTTGATTGGGAAAGATGACTTAGGTCA
dot-bracket secondary structure
.((((.....((.((((.(((((((.((((((.(((.(((((.(((((.((((((((((..(((((((((((((((..((.(((((((((...(((.(((
((.((((((..((((((.(((((......))))).....))))))..)))))).))))).)))...)))))))))...))..))))))).......))))
)))))))))))))).)))))....))))).))).)))))).))))))).)))).))....)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T, Plant J. [Epub prior to print](2011)., "Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns"
