ABOUT THIS RECORDspecies: Solanum lycopersicum
source: miRBase, original name: sly-MIR5301 (MI0018478)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGGGTGGGGTGGAAAGATT miRNA* TCTTTCCTACTCCTCCCATACC mismatches: 2 bulges: 1 |
pre-miRNA
GATCTGTGCTATGGAAATATTGATGGCGTTGAAAGGGATGAGAGTATTGGGAAGTTGTTGGTTGTGGGTGGGGTGGAAAGATTTGATAAATCTAATTTTA
AAGAGATTAAATCTTTCCTACTCCTCCCATACCCATGACTTCCACTAGCTTCTCCCTTTCTTCATTTGTCATCTCCTTTGCTAAGTTC
dot-bracket secondary structure
((.((..((...(((......(((((((..((((((((.((.(((....((((((..(.(((.(((((.((((((((((((((((((...(((.......
.))).))))))))))))).))))).)))))))).)..))))))....)))))))))))))......))))))))))...))..)).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T, Plant J. [Epub prior to print](2011)., "Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns"
GATCTGTGCTATGGAAATATTGATGGCGTTGAAAGGGATGAGAGTATTGGGAAGTTGTTGGTTGTGGGTGGGGTGGAAAGATTTGATAAATCTAATTTTA
AAGAGATTAAATCTTTCCTACTCCTCCCATACCCATGACTTCCACTAGCTTCTCCCTTTCTTCATTTGTCATCTCCTTTGCTAAGTTC
dot-bracket secondary structure
((.((..((...(((......(((((((..((((((((.((.(((....((((((..(.(((.(((((.((((((((((((((((((...(((.......
.))).))))))))))))).))))).)))))))).)..))))))....)))))))))))))......))))))))))...))..)).))
SIMILARITIES| miRBase ghr-MIR482a: 0.0000006 PMRD ghr-miR482a: 0.0000006 microPC miR472: 0.0000006 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T, Plant J. [Epub prior to print](2011)., "Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns"
