miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST041558
species:
Solanum lycopersicum
source:
miRBase, original name:
sly-MIR5302
(
MI0018479
)
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAACGAGGTTTGTTACTTTGG
miRNA*
AAAGTAACAAATCTCGTTTGA
mismatches:
0
bulges:
0
View larger
pre-miRNA
AAGCATTTTCAGCAAAATGAAATGCTATAGTTGGAAAGTTCTAAACATTTCGGATGATAGTTCC
AAAGTAACAAATCTCGTTTGA
ATGTCTCTTGATCAA
CTTTTATATATATATATATATATATATATCC
AAACGAGGTTTGTTACTTTGG
AATATCTTTCGAAATCTGAAAAACTTTTCAACTATAGCATTATTTTTT
GCGGAAAATTTGTTT
dot-bracket secondary structure
((((((((((.((((((...((((((((((((((((((((......((((((((.((((.((((
((((((((((((((((((((.
..(((....)))...
....((((((((((....))))))))))..)
)))))))))))))))))))))
)))))).))))))))......))))))))))))))))))))...))))
)).)))))..)))))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T,
Plant J. [Epub prior to print](2011).
,
"Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns"