ABOUT THIS RECORDspecies: Vitis vinifera
source: miRBase, original name: vvi-MIR156h (MI0007939)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAT miRNA* GTTCTTTCTGCGCCTTTCATT mismatches: 5 bulges: 1 |
pre-miRNA
TGCCTCACAATGACAGAAGAGAGAGAGCATGCTGGTGGGAAAACAATTACAACTTTTGATCATCTGATCTGGAAATGCTTGTAAGCGGCATTCTCTTGGA
TTGTAATCTGAATTCTGCCTCTATCATCAACCTGCCCACAAACGATTTCCTTCAACTGAGTGCCTTTCCGGCTTGAGCCTTCTGCATGATCAGCTGAGTT
CTTTCTGCGCCTTTCATTGTGTCCTGCC
dot-bracket secondary structure
.((..((((((((.((..((((((((((......(((((.......(((((((((((((((....))))..)))).).))))))..((((.....(..((
(....)))..)....))))...............)))))............(((.((((((((......(((....)))....))))..)))).))))))
)))))).)..)).))))))))....)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
TGCCTCACAATGACAGAAGAGAGAGAGCATGCTGGTGGGAAAACAATTACAACTTTTGATCATCTGATCTGGAAATGCTTGTAAGCGGCATTCTCTTGGA
TTGTAATCTGAATTCTGCCTCTATCATCAACCTGCCCACAAACGATTTCCTTCAACTGAGTGCCTTTCCGGCTTGAGCCTTCTGCATGATCAGCTGAGTT
CTTTCTGCGCCTTTCATTGTGTCCTGCC
dot-bracket secondary structure
.((..((((((((.((..((((((((((......(((((.......(((((((((((((((....))))..)))).).))))))..((((.....(..((
(....)))..)....))))...............)))))............(((.((((((((......(((....)))....))))..)))).))))))
)))))).)..)).))))))))....)).
SIMILARITIES| miRBase zma-MIR156j: 0.0007 PMRD vvi-miR156h: 5e-128 microPC no hits | UniProt sp|Q9S7A9|SPL4_ARATH: 0.001 RFAM no hits |
Identical with: vvi-miR156h from PMRD (MNEST054773) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
