ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR172
source: miRBase, original name: vvi-MIR172b (MI0006545)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATCTTGATGATGCTACAC miRNA* GCAGCATCATCAAGATTCTCA mismatches: 3 bulges: 0 |
pre-miRNA
TATTGCCGATGCAGCATCATCAAGATTCTCAACCCCAAAACTTGAGGCAGCGAAGATGGCATCGCTGCCGCGCCGGGCTTTCGCATGTGAATCTTGATGA
TGCTACACCTGCAAACAA
dot-bracket secondary structure
..((((.(.((.((((((((((((((((.((..............((((((((........)))))))).......((....)).)).))))))))))))
)))).)).).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
TATTGCCGATGCAGCATCATCAAGATTCTCAACCCCAAAACTTGAGGCAGCGAAGATGGCATCGCTGCCGCGCCGGGCTTTCGCATGTGAATCTTGATGA
TGCTACACCTGCAAACAA
dot-bracket secondary structure
..((((.(.((.((((((((((((((((.((..............((((((((........)))))))).......((....)).)).))))))))))))
)))).)).).))))....
SIMILARITIES| miRBase tcc-MIR172e: 0.00000000002 PMRD vvi-miR172b: 1e-62 microPC miR172: 0.000006 | UniProt no hits RFAM mir-172: 2e-61 |
Identical with: vvi-miR172b from PMRD (MNEST054838) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
