ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR399
source: miRBase, original name: vvi-MIR399b (MI0006574)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTG miRNA* GGGCACCTCTTTCTTGGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
ATCAATCATAGGGCACCTCTTTCTTGGCAGGCACTGGCTCCTATATATGAATATACATAGCTTAGCTGCAGTAAAAAGATGTGACTTGCCAAAGGAGAGT
TGCCCTGTGACTGCTTC
dot-bracket secondary structure
..((.((((((((((.(((((..(((((((((((..((..(((..((((......))))...)))..))...........))).))))))))..))))).
)))))))))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
ATCAATCATAGGGCACCTCTTTCTTGGCAGGCACTGGCTCCTATATATGAATATACATAGCTTAGCTGCAGTAAAAAGATGTGACTTGCCAAAGGAGAGT
TGCCCTGTGACTGCTTC
dot-bracket secondary structure
..((.((((((((((.(((((..(((((((((((..((..(((..((((......))))...)))..))...........))).))))))))..))))).
)))))))))).))....
SIMILARITIES| miRBase csi-MIR399d: 0.0000000001 PMRD vvi-miR399b: 5e-62 microPC miR399: 0.0000004 | UniProt no hits RFAM mir-399: 0.000000002 |
Identical with: vvi-miR399b from PMRD (MNEST054878) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
