ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR156
source: miRBase, original name: bdi-MIR156 (MI0011566)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCACA miRNA* AGTTGACAGAAGAGAGAGAGC mismatches: 13 bulges: 0 |
pre-miRNA
CGGATGGCGCCACCGGGCTGACCTGGAAGGCGCTGGCCGTCGACATTGCCGGGGGCCGGTTGTGGCTGGCGCTGTGGGCACTATGATCCCATGGCTGAGT
TGACAGAAGAGAGAGAGCACAGCTGGAGTCGGCGGCCGTGACTCCTG
dot-bracket secondary structure
.(((.((((((.(((((....)))))..))))))((((((((((..((((.((.((((((....)))))).))...))))......(((...(((((.((
(..(........)..))).)))))))))))))))))).....)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: qRT-PCR
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
CGGATGGCGCCACCGGGCTGACCTGGAAGGCGCTGGCCGTCGACATTGCCGGGGGCCGGTTGTGGCTGGCGCTGTGGGCACTATGATCCCATGGCTGAGT
TGACAGAAGAGAGAGAGCACAGCTGGAGTCGGCGGCCGTGACTCCTG
dot-bracket secondary structure
.(((.((((((.(((((....)))))..))))))((((((((((..((((.((.((((((....)))))).))...))))......(((...(((((.((
(..(........)..))).)))))))))))))))))).....)))..
SIMILARITIES| miRBase far-MIR156b: 3e-20 PMRD bdi-miR156: 7e-80 microPC miR157: 0.00003 | UniProt sp|Q7EXZ2|SPL14_ORYSJ: 0.0002 RFAM mir-156: 0.0005 |
Identical with: bdi-miR156 from PMRD (MNEST048305) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: qRT-PCR
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
