ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR156
source: miRBase, original name: bdi-MIR156b (MI0018104)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTCTCTGTCACC mismatches: 0 bulges: 2 |
pre-miRNA
GTGTTGTGGCAGGTGTGGCAAGGCTATGGGTGACAGAAGAGAGTGAGCACACAGCGGCCAGACTGCATCTATTCCTTCGGCGGCGGACACGGCCGGGCAT
GGCCGGCCATGGCATGGCATACACGAAAACGAATGATGCTGCTGCTGCTGCGTGCTCACTTCTCTCTCTGTCACCTCTCGCACACACGGCTAGCCCGCCA
GCCTC
dot-bracket secondary structure
.......(((.((((.(((..(((..((((((((((((((((((((((((.(((((((.((...(((((.((((.((((...((.(.((.((((((....
..)))))).))...).)).....))))...)))))))))..))))))))).)))))))).))))).))))))))).........))..))).))))))).
)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GTGTTGTGGCAGGTGTGGCAAGGCTATGGGTGACAGAAGAGAGTGAGCACACAGCGGCCAGACTGCATCTATTCCTTCGGCGGCGGACACGGCCGGGCAT
GGCCGGCCATGGCATGGCATACACGAAAACGAATGATGCTGCTGCTGCTGCGTGCTCACTTCTCTCTCTGTCACCTCTCGCACACACGGCTAGCCCGCCA
GCCTC
dot-bracket secondary structure
.......(((.((((.(((..(((..((((((((((((((((((((((((.(((((((.((...(((((.((((.((((...((.(.((.((((((....
..)))))).))...).)).....))))...)))))))))..))))))))).)))))))).))))).))))))))).........))..))).))))))).
)))..
SIMILARITIES| miRBase osa-MIR156f: 0.000000000000003 PMRD osa-miR156f: 0.000000000000003 microPC miR156: 0.0000007 | UniProt no hits RFAM mir-156: 0.0000000000008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
