ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR159
source: miRBase, original name: bdi-MIR159 (MI0018117)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCT miRNA* GAGCTCCCTTCGATCCAATCC mismatches: 1 bulges: 1 |
pre-miRNA
GGGCAAGCGAAAGATATAGACAAGAAGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGATGCAGCTGCCGGTTCATGGATACCTGTCTGG
TGCATGCAGTGTGGTAATAGCCTGCGCACCTGCATCGGTTTGCATGACCCGGGAGATGAACCTGCCAGCGTCTTTCCCTCGTGCTTGGATTGAAGGGAGC
TCTCTCTCCCCCCTCTCTCTCTCTCCCTCTCTCT
dot-bracket secondary structure
(((..((.((.(((........(((.((.((((((((((((((((((..((.(((((((((((((.((...((.((.((((.(((((.(.((((((..((
(((..((((.((.......))))))))))).)))..))).).))))).)))).)).))..)).))))....))))))))).)).))))))))))))))))
)))))))......))).)).))..))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GGGCAAGCGAAAGATATAGACAAGAAGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGATGCAGCTGCCGGTTCATGGATACCTGTCTGG
TGCATGCAGTGTGGTAATAGCCTGCGCACCTGCATCGGTTTGCATGACCCGGGAGATGAACCTGCCAGCGTCTTTCCCTCGTGCTTGGATTGAAGGGAGC
TCTCTCTCCCCCCTCTCTCTCTCTCCCTCTCTCT
dot-bracket secondary structure
(((..((.((.(((........(((.((.((((((((((((((((((..((.(((((((((((((.((...((.((.((((.(((((.(.((((((..((
(((..((((.((.......))))))))))).)))..))).).))))).)))).)).))..)).))))....))))))))).)).))))))))))))))))
)))))))......))).)).))..))).......
SIMILARITIES| miRBase zma-MIR159c: 5e-42 PMRD zma-miR159g: 5e-42 microPC miR319: 7e-38 | UniProt no hits RFAM MIR159: 9e-41 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
