ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR160
source: miRBase, original name: bdi-MIR160b (MI0018093)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCAAGGAGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
TCGATCCGAATTAATCGATCATCGGCTGCGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCGATCCGTGCCGAGGTTGGATGCTGTGGGTGGCGTGCA
AGGAGCCAAGCATGCATACATACAAGCTCCATGATCGATCCATCCA
dot-bracket secondary structure
.............(((((((((.((((((((((.(((((((.((((((((((.((((((..((((((((...)).)))))).))).))).))))))))))
.))))))).)))))).........))).).))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TCGATCCGAATTAATCGATCATCGGCTGCGTGCCTGGCTCCCTGTATGCCACACATGTAGCCCGATCCGTGCCGAGGTTGGATGCTGTGGGTGGCGTGCA
AGGAGCCAAGCATGCATACATACAAGCTCCATGATCGATCCATCCA
dot-bracket secondary structure
.............(((((((((.((((((((((.(((((((.((((((((((.((((((..((((((((...)).)))))).))).))).))))))))))
.))))))).)))))).........))).).))))))))).......
SIMILARITIES| miRBase sbi-MIR160b: 4e-29 PMRD sbi-miR160b: 4e-29 microPC miR160: 6e-22 | UniProt no hits RFAM mir-160: 1e-26 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
