ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR162_2
source: miRBase, original name: bdi-MIR162 (MI0018213)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCGG miRNA* GGGCGCAGTGGTTTATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
GCCTGGGCGCAGTGGTTTATCGATCCTTTCCCTGCCTTGTGCTACTGATCCTGGGCCGGGCGGCGATTGGATACTTTTTTTCTTCTTGTCACAGCTTATG
CGGGAATCGATCGATAAACCTCTGCATCCGGTT
dot-bracket secondary structure
..((((..((((.((((((((((((..(((((.((((.((.(..........).)).))))(((((..(((.........)))..)))))..........
.)))))..)))))))))))).))))..))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
GCCTGGGCGCAGTGGTTTATCGATCCTTTCCCTGCCTTGTGCTACTGATCCTGGGCCGGGCGGCGATTGGATACTTTTTTTCTTCTTGTCACAGCTTATG
CGGGAATCGATCGATAAACCTCTGCATCCGGTT
dot-bracket secondary structure
..((((..((((.((((((((((((..(((((.((((.((.(..........).)).))))(((((..(((.........)))..)))))..........
.)))))..)))))))))))).))))..))))..
SIMILARITIES| miRBase osa-MIR162a: 0.00000000000003 PMRD osa-miR162a: 0.00000000000003 microPC miR162: 0.000000000007 | UniProt no hits RFAM MIR162_2: 0.0000000000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
