ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR164
source: miRBase, original name: bdi-MIR164c (MI0018152)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCT miRNA* CATGTGCGCTCCTTCTCCAGC mismatches: 2 bulges: 0 |
pre-miRNA
ATGATTTGAGGAGAGGGGGCGAGCAAACCTTGCTGGAGAAGCAGGGCACGTGCTTGACCGGTCGGCCGGAGCCGGGTTGCAGCATGTGCGCTCCTTCTCC
AGCATGGCTTCTCGCCCCGTCGACCGGCGTTCGGCAGG
dot-bracket secondary structure
.(((.....((.((.((((((((.((.((.(((((((((((.((.((((((((((((((...((((....))))))))).))))))))).)).)))))))
)))).)).)))))))))).))..)).....))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
ATGATTTGAGGAGAGGGGGCGAGCAAACCTTGCTGGAGAAGCAGGGCACGTGCTTGACCGGTCGGCCGGAGCCGGGTTGCAGCATGTGCGCTCCTTCTCC
AGCATGGCTTCTCGCCCCGTCGACCGGCGTTCGGCAGG
dot-bracket secondary structure
.(((.....((.((.((((((((.((.((.(((((((((((.((.((((((((((((((...((((....))))))))).))))))))).)).)))))))
)))).)).)))))))))).))..)).....))).....
SIMILARITIES| miRBase osa-MIR164d: 0.00000000000003 PMRD osa-miR164d: 0.00000000000003 microPC miR164: 0.0004 | UniProt no hits RFAM MIR164: 0.0000000000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
