ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR164
source: miRBase, original name: bdi-MIR164d (MI0018214)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CATGTGTTCTTCTCCTCCATC mismatches: 2 bulges: 0 |
pre-miRNA
AGCGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATGCAACTAGAGCTTAGCTAGTGTCAATTCTTCCATCTCTTGTGCCTGGCCGGGATCGA
TCTTATATACCGAGCTTAATTTGGCACCTATTGGATGCTGCATGCATGTGTTCTTCTCCTCCATCACGGTCTTCATTTCTCTCGCT
dot-bracket secondary structure
((((((((((((((.(.(((((.((.((((((((((((((((.((.(((((.......))))).........((((......(((((.((((((......
.........))).)))......)))))....)))).)))))))))))))))))).)).))))).).)))))))......)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
AGCGAGAAGGACCGCGTTGGAGAAGCAGGGCACGTGCATGCATGCAACTAGAGCTTAGCTAGTGTCAATTCTTCCATCTCTTGTGCCTGGCCGGGATCGA
TCTTATATACCGAGCTTAATTTGGCACCTATTGGATGCTGCATGCATGTGTTCTTCTCCTCCATCACGGTCTTCATTTCTCTCGCT
dot-bracket secondary structure
((((((((((((((.(.(((((.((.((((((((((((((((.((.(((((.......))))).........((((......(((((.((((((......
.........))).)))......)))))....)))).)))))))))))))))))).)).))))).).)))))))......)))))))
SIMILARITIES| miRBase bdi-MIR164b: 5e-103 PMRD osa-miR164a: 7e-16 microPC miR164: 0.00004 | UniProt no hits RFAM MIR164: 0.000000000003 |
Identical with: bdi-MIR164b from miRBase (MNEST041738) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
