ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf493
source: miRBase, original name: bdi-MIR166e (MI0018112)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGCTCGAGGT mismatches: 4 bulges: 0 |
pre-miRNA
GGGATAGCAAAGGGGGAGCTTTTTTACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCTGAGATCGAGAGAACTTGAAATTCGATCTCTAGATTGATCTC
GGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCGTGTGGCCTGCGATTCT
dot-bracket secondary structure
(((...(((....((((((((...(((((.((((((((((..((((((..((((((.(((((((((((...........))))))))).))....)))))
)..))))))..))))))))))))))))))))))).)))..)))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GGGATAGCAAAGGGGGAGCTTTTTTACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCTGAGATCGAGAGAACTTGAAATTCGATCTCTAGATTGATCTC
GGACCAGGCTTCATTCCCCTCAAGTAAAGCTCCCGTGTGGCCTGCGATTCT
dot-bracket secondary structure
(((...(((....((((((((...(((((.((((((((((..((((((..((((((.(((((((((((...........))))))))).))....)))))
)..))))))..))))))))))))))))))))))).)))..)))........
SIMILARITIES| miRBase osa-MIR166d: 5e-16 PMRD osa-miR166d: 5e-16 microPC miR166: 0.00000003 | UniProt no hits RFAM mir-166: 0.0000000006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
