ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR167
source: miRBase, original name: bdi-MIR167a (MI0011561)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GACTTGTGGTGGCAAGTGCCACA mismatches: 7 bulges: 2 |
pre-miRNA
AGAGAAAGCGTGAAGCTGCCAGCATGATCTATCTGACTTGTGGTGGCAAGTGCCACAGCAAATTCAGCAACGCCGTGGCTTCGGGGCCGGC
dot-bracket secondary structure
.(((...(((((..(((((((.((..(((.....)).)..)).)))).)))..))).))...)))......(((..((((....)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: qRT-PCR
deep sequencing data evidence
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
[2] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
AGAGAAAGCGTGAAGCTGCCAGCATGATCTATCTGACTTGTGGTGGCAAGTGCCACAGCAAATTCAGCAACGCCGTGGCTTCGGGGCCGGC
dot-bracket secondary structure
.(((...(((((..(((((((.((..(((.....)).)..)).)))).)))..))).))...)))......(((..((((....)))))))
SIMILARITIES| miRBase osa-MIR167b: 0.00000000007 PMRD bdi-miR167: 1e-46 microPC miR167: 0.00007 | UniProt no hits RFAM MIR167_1: 0.000000001 |
Identical with: bdi-miR167 from PMRD (MNEST048308) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: qRT-PCR
deep sequencing data evidence
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
[2] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
