ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169_2
source: miRBase, original name: bdi-MIR169b (MI0011574)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCGG miRNA* GGTCTGAATCCATGCTGAT mismatches: 5 bulges: 2 |
pre-miRNA
GAGATAGAGAGTGGAATGTAGCCAAGGATGACTTGCCGGGTATGTGCATGTACGCTTCAGGGAATTATATGCATCCCTGGTCTGAATCCATGCTGATATT
TCCCGG
dot-bracket secondary structure
..........(.((((..((((...((((..(..((((((...(((((((((..((....))...))))))))).))))))..).))))..))))....)
))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
[2] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GAGATAGAGAGTGGAATGTAGCCAAGGATGACTTGCCGGGTATGTGCATGTACGCTTCAGGGAATTATATGCATCCCTGGTCTGAATCCATGCTGATATT
TCCCGG
dot-bracket secondary structure
..........(.((((..((((...((((..(..((((((...(((((((((..((....))...))))))))).))))))..).))))..))))....)
))))..
SIMILARITIES| miRBase vvi-MIR169a: 0.000000001 PMRD bdi-miR169b: 2e-55 microPC miR169: 0.00008 | UniProt no hits RFAM MIR169_2: 0.00000002 |
Identical with: bdi-miR169b from PMRD (MNEST048310) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
[2] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
