ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169
source: miRBase, original name: bdi-MIR169c (MI0018126)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAGGTTGTCCTTGGCTACA mismatches: 3 bulges: 0 |
pre-miRNA
TTGCCATACGCTAAGAGGCAGAGAAGGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTGTTGGGGGAATTGCAGCTTTGTTGAGCCTTGAGTTAGCC
GGCAGGTTGTCCTTGGCTACACCTAGTTCTCTTCTTCTGGTGTTTGGCCCT
dot-bracket secondary structure
..((((.((((((.((((.((((((.(((.((.(((((((((..((((((((((((((......))).........((((....))))........))))
)))))))..))))))))).)))))..)))))).)))))))))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TTGCCATACGCTAAGAGGCAGAGAAGGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTGTTGGGGGAATTGCAGCTTTGTTGAGCCTTGAGTTAGCC
GGCAGGTTGTCCTTGGCTACACCTAGTTCTCTTCTTCTGGTGTTTGGCCCT
dot-bracket secondary structure
..((((.((((((.((((.((((((.(((.((.(((((((((..((((((((((((((......))).........((((....))))........))))
)))))))..))))))))).)))))..)))))).)))))))))).))))...
SIMILARITIES| miRBase osa-MIR169c: 6e-25 PMRD bdi-miR169a: 6e-62 microPC miR169: 3e-17 | UniProt no hits RFAM MIR169_2: 2e-25 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
