ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169
source: miRBase, original name: bdi-MIR169d (MI0018079)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGAATGACTTGCCTA miRNA* GGTGGGTCTTCTTGGCTAGCC mismatches: 2 bulges: 2 |
pre-miRNA
ATGGAGATGGAGAGCCTCCCTTGATTTTGGTAGCCAAGAATGACTTGCCTATGCTTGCCCTCTGCTAACCAGCTAGCCATGCATGGTAACCAATGGACAA
ATTTCTTGTGGTTGGCGTGGTTAGTGTGGTTGCATGGGTGGGTCTTCTTGGCTAGCCAGAGCGGCTCTCATCCACCATGCCAGGCCA
dot-bracket secondary structure
((((.((((.((((((.(.......(((((((((((((((.((((..(((((((..(((..(.(((((((((((((((((...(((...)))..(((...
...))).))))))))).))))))))).))).)))))))..))))))))))))).))))))).))))))))))..)))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
ATGGAGATGGAGAGCCTCCCTTGATTTTGGTAGCCAAGAATGACTTGCCTATGCTTGCCCTCTGCTAACCAGCTAGCCATGCATGGTAACCAATGGACAA
ATTTCTTGTGGTTGGCGTGGTTAGTGTGGTTGCATGGGTGGGTCTTCTTGGCTAGCCAGAGCGGCTCTCATCCACCATGCCAGGCCA
dot-bracket secondary structure
((((.((((.((((((.(.......(((((((((((((((.((((..(((((((..(((..(.(((((((((((((((((...(((...)))..(((...
...))).))))))))).))))))))).))).)))))))..))))))))))))).))))))).))))))))))..)))).........
SIMILARITIES| miRBase sbi-MIR169i: 0.00000000004 PMRD sbi-miR169i: 0.00000000004 microPC no hits | UniProt no hits RFAM MIR169_5: 0.00000000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
