ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169
source: miRBase, original name: bdi-MIR169e (MI0018114)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
CCTTACATGGTGATAAGGGGTTTGGCCCTGATAGCCAAGGATGACTTGCCTGTGCATGTCCTCCCTTGATCGCTTGCATAATTTCATATATGCATGTGAT
CTCGATTTATCACAGGCAGTCTCCTTGGCTAGCCTGGGTGCCTCTTATCCTCCATGCTAGGCCT
dot-bracket secondary structure
(((..(((((.((((((((((...((((...((((((((((.((((.(((((((.(((...((....((((((.((((((........)))))).)))))
)..))..))))))))))))))))))))))))....))))))))))))))..)))))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
CCTTACATGGTGATAAGGGGTTTGGCCCTGATAGCCAAGGATGACTTGCCTGTGCATGTCCTCCCTTGATCGCTTGCATAATTTCATATATGCATGTGAT
CTCGATTTATCACAGGCAGTCTCCTTGGCTAGCCTGGGTGCCTCTTATCCTCCATGCTAGGCCT
dot-bracket secondary structure
(((..(((((.((((((((((...((((...((((((((((.((((.(((((((.(((...((....((((((.((((((........)))))).)))))
)..))..))))))))))))))))))))))))....))))))))))))))..)))))..)))...
SIMILARITIES| miRBase osa-MIR169q: 0.00000003 PMRD osa-miR169q: 0.00000003 microPC miR169: 0.000008 | UniProt no hits RFAM MIR169_5: 0.0000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
