ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169
source: miRBase, original name: bdi-MIR169f (MI0018160)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAATGTCGCCGCCGGCGTGACATGATGCTTGCCCGGCAAGTTTGTCCTTGGCTACA mismatches: 1 bulges: 37 |
pre-miRNA
GGGCCATGCAGGACGAGGCACAGAGCAGGATGCAGCCAAGGATGACTTGCCGGCCGGCTGGCCGGCAATGTCGCCGCCGGCGTGACATGATGCTTGCCCG
GCAAGTTTGTCCTTGGCTACACCTTGCTCTCTGCCCATCATGTGTTGCCCT
dot-bracket secondary structure
((((.(((((.((.(.((((.((((((((.((.((((((((((((((((((((((....))))))))).)))...(((((.(..(........)..))))
))......)))))))))).)).)))))))).))))).)).))))).)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GGGCCATGCAGGACGAGGCACAGAGCAGGATGCAGCCAAGGATGACTTGCCGGCCGGCTGGCCGGCAATGTCGCCGCCGGCGTGACATGATGCTTGCCCG
GCAAGTTTGTCCTTGGCTACACCTTGCTCTCTGCCCATCATGTGTTGCCCT
dot-bracket secondary structure
((((.(((((.((.(.((((.((((((((.((.((((((((((((((((((((((....))))))))).)))...(((((.(..(........)..))))
))......)))))))))).)).)))))))).))))).)).))))).)))).
SIMILARITIES| miRBase osa-MIR169p: 0.0000000000001 PMRD osa-miRf11416-akr: 5e-16 microPC miR169: 0.0000005 | UniProt no hits RFAM MIR169_2: 0.0000000000006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
