ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169
source: miRBase, original name: bdi-MIR169g (MI0018105)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
GGTGTTGCGTGGGCAGAGAAGAAGCCTTACATGGCAGCAAGGGGCTTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCATACTTCAAGGCTTGGCAAC
ATGATGCATGAGCCTTTGTTGTAGTCTCATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCTCTTGCGGCTCATGCCAGGCTG
dot-bracket secondary structure
(((.(.((((((((.........(((......))).(((((((.(....(((...((((((((((.((((.(((((((...(((..((((((((((((..
....))).)))))).)))..)))....)))))))))))))))))))))....))).).))))))).)))))))).).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GGTGTTGCGTGGGCAGAGAAGAAGCCTTACATGGCAGCAAGGGGCTTATCTCTGATAGCCAAGGATGACTTGCCTGTGTCATACTTCAAGGCTTGGCAAC
ATGATGCATGAGCCTTTGTTGTAGTCTCATAGGCAGTCTCCTTGGCTAGCCTGAGTGGCTCTTGCGGCTCATGCCAGGCTG
dot-bracket secondary structure
(((.(.((((((((.........(((......))).(((((((.(....(((...((((((((((.((((.(((((((...(((..((((((((((((..
....))).)))))).)))..)))....)))))))))))))))))))))....))).).))))))).)))))))).).))).
SIMILARITIES| miRBase far-MIR169: 1e-17 PMRD osa-miR169q: 0.0000000000006 microPC miR169: 0.0000006 | UniProt no hits RFAM MIR169_5: 0.000000000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
