ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169_7
source: miRBase, original name: bdi-MIR169i (MI0018080)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGCCAAGAATGGCTTGCCTA miRNA* GTCAAGCCATCTTGGCTAGAA mismatches: 2 bulges: 1 |
pre-miRNA
TGGAGACGAGGAGCCCCTTTGCAGGCTCTACCAGCCAAGAATGGCTTGCCTATGCCCACGTTCTGTTTCATCACCACTGGGCTTAATCTTGGAGCCCTGG
TGATGGATGAGATGTGATTGTATGGTCAAGCCATCTTGGCTAGAAGAGAGATCCTCGTCCCCCATGCTAGGCTGC
dot-bracket secondary structure
.((.((((((((...(((....)))((((.(.((((((((.(((((((.((((((.(((((.((..((((((((((..((((((.......)))))))))
)))))))..)))))))...)))))).))))))))))))))).).))))...)))))))).)).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TGGAGACGAGGAGCCCCTTTGCAGGCTCTACCAGCCAAGAATGGCTTGCCTATGCCCACGTTCTGTTTCATCACCACTGGGCTTAATCTTGGAGCCCTGG
TGATGGATGAGATGTGATTGTATGGTCAAGCCATCTTGGCTAGAAGAGAGATCCTCGTCCCCCATGCTAGGCTGC
dot-bracket secondary structure
.((.((((((((...(((....)))((((.(.((((((((.(((((((.((((((.(((((.((..((((((((((..((((((.......)))))))))
)))))))..)))))))...)))))).))))))))))))))).).))))...)))))))).)).............
SIMILARITIES| miRBase bdi-MIR169j: 0.0000006 PMRD osa-miR1430: 0.0001 microPC miR1430: 0.0001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
