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ABOUT THIS RECORD

ID: MNEST041762
species: Brachypodium distachyon
miRNA family: MIR169
source: miRBase, original name: bdi-MIR169j (MI0018082)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAGGAATGGCTTGCCTA

miRNA*
GTCAAGCCTTCCTGACTAGG

mismatches: 2
bulges: 1

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pre-miRNA
CTTACATGGAGATAAGGAGCCTACCTCTGTTAGCCAGGAATGGCTTGCCTACGCACACATTTTTCGGTTCATCACAGGGGCAAAACTAACTTGGAGATAG
CCCCTAGTATGATGGACGGAGTGTGGCTGCATGGTCAAGCCTTCCTGACTAGGAGAGTGCTCCTCATCCCCCATGCTAGGCTG


dot-bracket secondary structure
(((((((((.(((.((((((....((((.((((.((((((.((((((.(((.(((..(((..(((.((((((((.((((((..................)
)))))....)))))))).))).)))..))).))).)))))))))))).)))).)))).)))))).)))..))))).))))...



SIMILARITIES
miRBase bdi-MIR169i: 0.0000006

PMRD osa-miR1430: 0.000002

microPC no hits
UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"




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