ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169_1
source: miRBase, original name: bdi-MIR169k (MI0018097)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGATTTGCCTGT miRNA* GGGCAAGTCAGCCTGGCTACC mismatches: 1 bulges: 1 |
pre-miRNA
TCTTTGCATGGAAGTAGGAGGCCATCTTTGATAGCCAAGGATGATTTGCCTGTAAAACCGATTGTCGTCGCCTCTCGGTGCCGTTCCAGGCACTCGAAGG
GAGGGCGGCAGCAACAGGTTCTATGGGCAAGTCAGCCTGGCTACCCGAGTACCTCTTACCCATATTCCATGCCA
dot-bracket secondary structure
.....((((((((((((((((....(((.(.((((((.((.(((((((((((((.((((..((((.((((((((((((((((......))))))....))
)).)))))).))))..)))).))))))))))))).)))))))).).)))..)))))))).....))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
TCTTTGCATGGAAGTAGGAGGCCATCTTTGATAGCCAAGGATGATTTGCCTGTAAAACCGATTGTCGTCGCCTCTCGGTGCCGTTCCAGGCACTCGAAGG
GAGGGCGGCAGCAACAGGTTCTATGGGCAAGTCAGCCTGGCTACCCGAGTACCTCTTACCCATATTCCATGCCA
dot-bracket secondary structure
.....((((((((((((((((....(((.(.((((((.((.(((((((((((((.((((..((((.((((((((((((((((......))))))....))
)).)))))).))))..)))).))))))))))))).)))))))).).)))..)))))))).....))))))))..
SIMILARITIES| miRBase tae-MIR1433: 0.000000000009 PMRD osa-miR1433: 0.00000000004 microPC miR169: 0.000009 | UniProt no hits RFAM MIR169_5: 2e-16 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
