ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR172
source: miRBase, original name: bdi-MIR172a (MI0018110)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCAT miRNA* GCAGCACCACCAAGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
AGGCGGCACGCACAGTCGGCGCTTGCAGGTGCAGCACCACCAAGATTCACATCGGGTTCTCCAGTCGTAATTAATTAACGAGGAGTACAACCATGATGAG
AATCTTGATGATGCTGCATCGGCAACCGCTCGACTACTCATCATATCGTCAAT
dot-bracket secondary structure
.(((((.......((((((((.((((.(((((((((.((.((((((((.(((((((((((((..((((.........))))))))...)))).))))).)
))))))).)).))))))))).)))).))).)))))..........)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
AGGCGGCACGCACAGTCGGCGCTTGCAGGTGCAGCACCACCAAGATTCACATCGGGTTCTCCAGTCGTAATTAATTAACGAGGAGTACAACCATGATGAG
AATCTTGATGATGCTGCATCGGCAACCGCTCGACTACTCATCATATCGTCAAT
dot-bracket secondary structure
.(((((.......((((((((.((((.(((((((((.((.((((((((.(((((((((((((..((((.........))))))))...)))).))))).)
))))))).)).))))))))).)))).))).)))))..........)))))...
SIMILARITIES| miRBase osa-MIR172d: 0.00000000000003 PMRD osa-miR172d: 0.00000000000003 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 0.000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
