ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR172
source: miRBase, original name: bdi-MIR172b (MI0018121)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATCTTGATGATGCTGCAT miRNA* GTGGCATCATCAAGATTCACA mismatches: 4 bulges: 0 |
pre-miRNA
GTTCGCGGCGACCAGTCGGTGATTTCTGCTGTGGCATCATCAAGATTCACACAAATGCATGCTAGCTTCGTCTATGCCATCCTTTCTCATCTTTCGATCT
CGATCTCGGCCCTAATTAAGTAATTATACCCAATTGTGGATCGGCCGGATTGGAGATCGATGGATGCGTGGAGAGGAGCTAGATTAGCTATAGCTTATGT
GTGGGAATCTTGATGATGCTGCATCGGACATCAGTGACTAAAACAAGTATGGCA
dot-bracket secondary structure
....((.((....(((((.((((.((((.((..(((((((((((((((.((((.(((...(((((((..(((((.((..(((((((((((((.(((((((
(((((.(((((.....(((....)))...(((....)))...))))))))).)))))))).)))))...))))))))))))))).))))..))).))).)
))).)))))))))))))))..)).)))).)))).))))).......))...)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GTTCGCGGCGACCAGTCGGTGATTTCTGCTGTGGCATCATCAAGATTCACACAAATGCATGCTAGCTTCGTCTATGCCATCCTTTCTCATCTTTCGATCT
CGATCTCGGCCCTAATTAAGTAATTATACCCAATTGTGGATCGGCCGGATTGGAGATCGATGGATGCGTGGAGAGGAGCTAGATTAGCTATAGCTTATGT
GTGGGAATCTTGATGATGCTGCATCGGACATCAGTGACTAAAACAAGTATGGCA
dot-bracket secondary structure
....((.((....(((((.((((.((((.((..(((((((((((((((.((((.(((...(((((((..(((((.((..(((((((((((((.(((((((
(((((.(((((.....(((....)))...(((....)))...))))))))).)))))))).)))))...))))))))))))))).))))..))).))).)
))).)))))))))))))))..)).)))).)))).))))).......))...)).
SIMILARITIES| miRBase osa-MIR172b: 0.00000000001 PMRD osa-miR172b: 0.00000000001 microPC miR172: 0.00001 | UniProt no hits RFAM mir-172: 0.0000000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
