ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR172
source: miRBase, original name: bdi-MIR172d (MI0011567)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GGAGCCATCGGGTCAAACC mismatches: 7 bulges: 2 |
pre-miRNA
TGGAGCCATCGGGTCAAACCGGAATGAGGCCGGTGTGGCGGCGGGGGCAGCTGTCGTGGTGGCAGTTTTGGAGAATCCTGATGATGCTGCAGC
dot-bracket secondary structure
((.((((((((((.....(((((((...((((.(..((((((.......))))))..).)))).))))))).....)))))))..))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
TGGAGCCATCGGGTCAAACCGGAATGAGGCCGGTGTGGCGGCGGGGGCAGCTGTCGTGGTGGCAGTTTTGGAGAATCCTGATGATGCTGCAGC
dot-bracket secondary structure
((.((((((((((.....(((((((...((((.(..((((((.......))))))..).)))).))))))).....)))))))..))).))..
SIMILARITIES| miRBase mtr-MIR172: 0.000004 PMRD bdi-miR172d: 7e-48 microPC miR172: 0.00007 | UniProt no hits RFAM mir-172: 0.00008 |
Identical with: bdi-miR172d from PMRD (MNEST048314) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
