ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR159
source: miRBase, original name: bdi-MIR319 (MI0018137)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGGAGCTTTCTTCTGTCC miRNA* ACTGAAGGGAGCTCCCTCACC mismatches: 3 bulges: 0 |
pre-miRNA
TTATAGCAGAAGGAGGAGGAGGTATTCATTTGAGGGAGCTTTCTTCTGTCCACCCATGGGAGGTAGCGGGGATTGAACGAGCTGCCGACTCATTCACTCG
AACACACAGTGGATAACTGGATATGCAGACTAATCCAAGGCATAATATCTACTAGTGTGGAATAATATCTACTGTGTGAATGAGCGAATGAAGCGGGAGA
TTGTTCTCTCTTTCCTCCTCCATGCTTGGACTGAAGGGAGCTCCCTCACCTCTCATCACTTTCTCCCTCTTCTCCTTGAT
dot-bracket secondary structure
....((.(((((..(((((((((.......((((((((((..((((.(((((..(((((.(((.((..((((..((((((.((.(((..((((((.((((
..(((((((((((((..(((((..........)))))..........(((((....)))))....)))))))))))))..)))).))))))..))).)).
))))))..))))..))))))))))..))))).))))..)))))))))).........)))))))))..))))).))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
TTATAGCAGAAGGAGGAGGAGGTATTCATTTGAGGGAGCTTTCTTCTGTCCACCCATGGGAGGTAGCGGGGATTGAACGAGCTGCCGACTCATTCACTCG
AACACACAGTGGATAACTGGATATGCAGACTAATCCAAGGCATAATATCTACTAGTGTGGAATAATATCTACTGTGTGAATGAGCGAATGAAGCGGGAGA
TTGTTCTCTCTTTCCTCCTCCATGCTTGGACTGAAGGGAGCTCCCTCACCTCTCATCACTTTCTCCCTCTTCTCCTTGAT
dot-bracket secondary structure
....((.(((((..(((((((((.......((((((((((..((((.(((((..(((((.(((.((..((((..((((((.((.(((..((((((.((((
..(((((((((((((..(((((..........)))))..........(((((....)))))....)))))))))))))..)))).))))))..))).)).
))))))..))))..))))))))))..))))).))))..)))))))))).........)))))))))..))))).))....
SIMILARITIES| miRBase tae-MIR319: 6e-48 PMRD tae-miR319a: 1e-42 microPC miR319: 0.0000009 | UniProt no hits RFAM MIR159: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
