ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR159
source: miRBase, original name: bdi-MIR319b (MI0018236)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGTGCTCCCT miRNA* AGAGCTCTCTTCAGTCCACTC mismatches: 3 bulges: 0 |
pre-miRNA
ATGTATAAGAGAGCTCTCTTCAGTCCACTCTCAGATGACTGTAGGGTTTTATTAGCTGCCGATTCATCCATTCACCTACCAAGAATCATGAGGGCGTATA
TGTCTTGGTAGCCGACTGGATGGCACGGGAGCTACAAAAAGCTTTTCGTTGTTTGTGGTTGGACTGAAGGGTGCTCCCTTGCTTACAATA
dot-bracket secondary structure
.((((((((.((((.((((((((((((..(.((((..((...((((((((..(((((.(((..(((((((.((..(((((((((..((((........))
)))))))))))..)).)))))))..))).)))))...))))))))..))..)))).)..)))))))))))).)))).))))..))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
ATGTATAAGAGAGCTCTCTTCAGTCCACTCTCAGATGACTGTAGGGTTTTATTAGCTGCCGATTCATCCATTCACCTACCAAGAATCATGAGGGCGTATA
TGTCTTGGTAGCCGACTGGATGGCACGGGAGCTACAAAAAGCTTTTCGTTGTTTGTGGTTGGACTGAAGGGTGCTCCCTTGCTTACAATA
dot-bracket secondary structure
.((((((((.((((.((((((((((((..(.((((..((...((((((((..(((((.(((..(((((((.((..(((((((((..((((........))
)))))))))))..)).)))))))..))).)))))...))))))))..))..)))).)..)))))))))))).)))).))))..))))...
SIMILARITIES| miRBase osa-MIR319a: 1e-45 PMRD osa-miR319a: 1e-45 microPC miR319: 0.0000002 | UniProt no hits RFAM MIR159: 2e-44 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
