ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR390
source: miRBase, original name: bdi-MIR390 (MI0018085)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCTATCCTGAGCTCCA mismatches: 3 bulges: 0 |
pre-miRNA
CCAATCGAGATCGGTAAGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTAGGTTCACTGCAACCAACAAGAGAACCGGCCATCGATATATACATATA
TATGTCCTCGATCGACCGATCGATCTCTTGCTGGTTCCGTCGATCTGTTCGTCCGAAGCGCTATCTATCCTGAGCTCCACGGTTCGTTCGTTCTTACCAT
GCCCACACA
dot-bracket secondary structure
............((((((((((...((.((.(((((((((.(((((((((.((((((.((.(.(((((.(((((((..........((((((((....))
)))))).((((((....))))))))))))).)))))).)).)))))).((....)).))))))))).))))))))).)).))...))))...))))))..
.........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
CCAATCGAGATCGGTAAGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTAGGTTCACTGCAACCAACAAGAGAACCGGCCATCGATATATACATATA
TATGTCCTCGATCGACCGATCGATCTCTTGCTGGTTCCGTCGATCTGTTCGTCCGAAGCGCTATCTATCCTGAGCTCCACGGTTCGTTCGTTCTTACCAT
GCCCACACA
dot-bracket secondary structure
............((((((((((...((.((.(((((((((.(((((((((.((((((.((.(.(((((.(((((((..........((((((((....))
)))))).((((((....))))))))))))).)))))).)).)))))).((....)).))))))))).))))))))).)).))...))))...))))))..
.........
SIMILARITIES| miRBase bdi-MIR390b: 6e-103 PMRD osa-miR390: 0.0000000000002 microPC miR390: 0.00004 | UniProt no hits RFAM MIR390: 0.00000000001 |
Identical with: bdi-MIR390b from miRBase (MNEST041773) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
