ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR390
source: miRBase, original name: bdi-MIR390b (MI0018217)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCTATCCTGAGCTCCA mismatches: 3 bulges: 0 |
pre-miRNA
GGTAAGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTAGGTTCACTGCAACCAACAAGAGAACCGGCCATCGATATATACATATATATGTCCTCGAT
CGACCGATCGATCTCTTGCTGGTTCCGTCGATCTGTTCGTCCGAAGCGCTATCTATCCTGAGCTCCACGGTTCGTTCGTTCTTACC
dot-bracket secondary structure
((((((((((...((.((.(((((((((.(((((((((.((((((.((.(.(((((.(((((((..........((((((((....)))))))).(((((
(....))))))))))))).)))))).)).)))))).((....)).))))))))).))))))))).)).))...))))...))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
GGTAAGGAACAATCCTTGAAGCTCAGGAGGGATAGCGCCTAGGTTCACTGCAACCAACAAGAGAACCGGCCATCGATATATACATATATATGTCCTCGAT
CGACCGATCGATCTCTTGCTGGTTCCGTCGATCTGTTCGTCCGAAGCGCTATCTATCCTGAGCTCCACGGTTCGTTCGTTCTTACC
dot-bracket secondary structure
((((((((((...((.((.(((((((((.(((((((((.((((((.((.(.(((((.(((((((..........((((((((....)))))))).(((((
(....))))))))))))).)))))).)).)))))).((....)).))))))))).))))))))).)).))...))))...))))))
SIMILARITIES| miRBase bdi-MIR390: 5e-103 PMRD osa-miR390: 0.0000000000002 microPC miR390: 0.00004 | UniProt no hits RFAM MIR390: 0.00000000001 |
Identical with: bdi-MIR390 from miRBase (MNEST041772) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
