ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR393
source: miRBase, original name: bdi-MIR393b (MI0018123)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCAGTGCAATCCCTTTGGAAT mismatches: 1 bulges: 0 |
pre-miRNA
GCTGGCAAATTAGTGTAAGCTTCAGGAAGCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATG
GATCGATGCATATGCAAGATCAGTGCAATCCCTTTGGAATTCTCGACTCGCCTCTGCCTCGGTCGGTCACGCGC
dot-bracket secondary structure
((.(((...........(((((....))))).((.(((((.(((((((((((.((((((((((...((..((((((....(((..(((....)))..)))
....))))))..))..)))))))))).))))))))))).))))).))..)))...(((......)))...))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GCTGGCAAATTAGTGTAAGCTTCAGGAAGCTAGTGGAGGACTCCAAAGGGATCGCATTGATCTCATCAGCTGCATCCAAGCATGAATCAACGGATGGATG
GATCGATGCATATGCAAGATCAGTGCAATCCCTTTGGAATTCTCGACTCGCCTCTGCCTCGGTCGGTCACGCGC
dot-bracket secondary structure
((.(((...........(((((....))))).((.(((((.(((((((((((.((((((((((...((..((((((....(((..(((....)))..)))
....))))))..))..)))))))))).))))))))))).))))).))..)))...(((......)))...))..
SIMILARITIES| miRBase zma-MIR393a: 0.00000000000004 PMRD zma-miR393: 0.00000000000004 microPC miR393: 0.00003 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
