ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR394
source: miRBase, original name: bdi-MIR394 (MI0018115)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGGCATACTGCCAATG mismatches: 2 bulges: 0 |
pre-miRNA
GCAGTAGTAATAGTCATGTGGGTTTGCCAAAGGGGCGCTTACCGAGAGCTCTTTGGCATTCTGTCCACCTCCTTGCGAGTCTCGCGGGAGATCTCATGAT
CTGTTGTTGAGCTTGCAGATAGCTTGGAGGTGGGCATACTGCCAATGGAGCTGTGTAGGCTTCCCTTTGTAAAACCCATATGGCGAAGATCAAACCAGCT
dot-bracket secondary structure
............(((((((((((((..((((((((.((((((..(.((((((((((((.(.((((((((((((((((((.(((((((.(((((....)))
)).))).))))))))))).......))))))))))).).)))))).)))))).))))))).))))))))..)))))))))))))................
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
GCAGTAGTAATAGTCATGTGGGTTTGCCAAAGGGGCGCTTACCGAGAGCTCTTTGGCATTCTGTCCACCTCCTTGCGAGTCTCGCGGGAGATCTCATGAT
CTGTTGTTGAGCTTGCAGATAGCTTGGAGGTGGGCATACTGCCAATGGAGCTGTGTAGGCTTCCCTTTGTAAAACCCATATGGCGAAGATCAAACCAGCT
dot-bracket secondary structure
............(((((((((((((..((((((((.((((((..(.((((((((((((.(.((((((((((((((((((.(((((((.(((((....)))
)).))).))))))))))).......))))))))))).).)))))).)))))).))))))).))))))))..)))))))))))))................
SIMILARITIES| miRBase zma-MIR394a: 0.00000000000004 PMRD zma-miR394a: 0.00000000000004 microPC miR394: 0.0002 | UniProt no hits RFAM MIR394: 0.0000000000008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
[2] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
