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ABOUT THIS RECORD

ID: MNEST041781
species: Brachypodium distachyon
miRNA family: MIR395
source: miRBase, original name: bdi-MIR395e (MI0018220)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGTGTTTGGGGGAACTC

miRNA*
GTTCTCCTCAAATCACTTCAGT

mismatches: 0
bulges: 2

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pre-miRNA
GTTGGTTGTCACCTGGAGTTCTCCTCAAATCACTTCAGTAGCTAGCTAGCTTGTGCCTCCTTGTTGCATTGCCACTGTTTTATAAGTGTGCTTGGGGCCA
GAGAGCTGTGCACAGTGAAGTGTTTGGGGGAACTCTGGGTGGCAACCAGC


dot-bracket secondary structure
(((((((((((((..(((((((((.((((.(((((((.(.(((((((..((.(.(((.((.....(((....((((........)))))))..)))))))
)..))))).))..).))))))))))))))))))))..)))))))))))))



SIMILARITIES
miRBase bdi-MIR395a: 5e-44

PMRD zma-miR395a: 0.0000000000005

microPC miR395: 0.00003
UniProt no hits

RFAM mir-395: 0.000000000009

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"




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