ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR395
source: miRBase, original name: bdi-MIR395i (MI0018218)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGTGTTTGGGGGAACTC miRNA* ATTCCCTACAAGCACTTCACA mismatches: 1 bulges: 1 |
pre-miRNA
TGGTATTATCATGAATTCCCTACAAGCACTTCACAAGAAGCTATTCCTAGGGCTATTGTGAAGTGTTTGGGGGAACTCTTGATGTCACCA
dot-bracket secondary structure
.(((..(((((.((.((((((.((((((((((((((..((((........)))).)))))))))))))))))))).)).)))))..))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
TGGTATTATCATGAATTCCCTACAAGCACTTCACAAGAAGCTATTCCTAGGGCTATTGTGAAGTGTTTGGGGGAACTCTTGATGTCACCA
dot-bracket secondary structure
.(((..(((((.((.((((((.((((((((((((((..((((........)))).)))))))))))))))))))).)).)))))..))).
SIMILARITIES| miRBase bdi-MIR395b: 6e-30 PMRD osa-miR395g: 0.00000000007 microPC miR395: 0.000004 | UniProt no hits RFAM mir-395: 0.0000000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
