ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR396
source: miRBase, original name: bdi-MIR396b (MI0018125)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGCCCATGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
GGAGTAGTAAAAGAGATGCGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTTCTCCTCTGAATTGTGTCGTGGAATTGCGGG
CTTGTTCTTTATCCGTCGATCTCTCCGCCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCCATCTTGGTCTCGCGTCCCCGT
dot-bracket secondary structure
(((((((.....((((((.((((.((((.((((((..((((((((((((((((.(((..(((((((.((((......))))...((((((((.....(((
....)))....)))).)))).)))))))..))).))))))))))))))))..)))))).))))))))))))))...)).)).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GGAGTAGTAAAAGAGATGCGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTTCTCCTCTGAATTGTGTCGTGGAATTGCGGG
CTTGTTCTTTATCCGTCGATCTCTCCGCCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCCATCTTGGTCTCGCGTCCCCGT
dot-bracket secondary structure
(((((((.....((((((.((((.((((.((((((..((((((((((((((((.(((..(((((((.((((......))))...((((((((.....(((
....)))....)))).)))).)))))))..))).))))))))))))))))..)))))).))))))))))))))...)).)).)))....
SIMILARITIES| miRBase bdi-MIR396f: 4e-88 PMRD osa-miR396d: 5e-23 microPC miR396: 0.0000000002 | UniProt no hits RFAM MIR396: 2e-19 |
Identical with: bdi-MIR396f from miRBase (MNEST041796) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
