ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR396
source: miRBase, original name: bdi-MIR396e (MI0018108)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GGTCAAGAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
CTCGAGCAAGTAGTTAGTCCATGCCATTCCTTTCCACAGCTTTCTTGAACTTCCCTTCCCGGACTGCGGCCTGTAGCTCTCTCGCCCTCTTGATCTCCCG
TCGATCTCCACTGGTAGCAGCTGGGAGAGCAGGGAAGAGGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATAACCAGGACTTTGATTGAATTCAGTTCA
T
dot-bracket secondary structure
...((((...((((((((((((((((((.(((((((((((((((((((.(((((((((((..((........)).((((((((((((....((((.....
..))))......)).....)).)))))))).)))))).))))).))))))))))))))))))).)))))))).....)))))..)))))......)))).
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
CTCGAGCAAGTAGTTAGTCCATGCCATTCCTTTCCACAGCTTTCTTGAACTTCCCTTCCCGGACTGCGGCCTGTAGCTCTCTCGCCCTCTTGATCTCCCG
TCGATCTCCACTGGTAGCAGCTGGGAGAGCAGGGAAGAGGAGGGTCAAGAAAGCTGTGGGAAGAAATGGCATAACCAGGACTTTGATTGAATTCAGTTCA
T
dot-bracket secondary structure
...((((...((((((((((((((((((.(((((((((((((((((((.(((((((((((..((........)).((((((((((((....((((.....
..))))......)).....)).)))))))).)))))).))))).))))))))))))))))))).)))))))).....)))))..)))))......)))).
.
SIMILARITIES| miRBase sbi-MIR396c: 0.000000000003 PMRD sbi-miR396c: 0.000000000003 microPC miR396: 0.00001 | UniProt no hits RFAM MIR396: 0.00000000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
