ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR396
source: miRBase, original name: bdi-MIR396f (MI0018237)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGCCCATGGAAA mismatches: 2 bulges: 0 |
pre-miRNA
GAGATGCGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTTCTCCTCTGAATTGTGTCGTGGAATTGCGGGCTTGTTCTTTAT
CCGTCGATCTCTCCGCCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCCATCTT
dot-bracket secondary structure
((((((.((((.((((.((((((..((((((((((((((((.(((..(((((((.((((......))))...((((((((.....(((....)))....)
))).)))).)))))))..))).))))))))))))))))..)))))).))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
GAGATGCGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTTCTCCTCTGAATTGTGTCGTGGAATTGCGGGCTTGTTCTTTAT
CCGTCGATCTCTCCGCCTGTTGATGGTTCAAGAAAGCCCATGGAAACCATGCCGCCATCTT
dot-bracket secondary structure
((((((.((((.((((.((((((..((((((((((((((((.(((..(((((((.((((......))))...((((((((.....(((....)))....)
))).)))).)))))))..))).))))))))))))))))..)))))).))))))))))))))
SIMILARITIES| miRBase bdi-MIR396b: 4e-88 PMRD osa-miR396d: 4e-23 microPC miR396: 0.0000000001 | UniProt no hits RFAM MIR396: 2e-19 |
Identical with: bdi-MIR396b from miRBase (MNEST041792) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
