ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR397
source: miRBase, original name: bdi-MIR397a (MI0011565)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATTGAGTGCAGCGTTGATG miRNA* CCGGCGCTGCACACAGTGACG mismatches: 2 bulges: 0 |
pre-miRNA
GAAGAGGCGCAAAGGCATCATTGAGTGCAGCGTTGATGAACAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGCTGCACACAGTGACG
CCCTTGCATTCTCTGGCCCGATTC
dot-bracket secondary structure
..(((((.((((.(((.((((((.(((((((((((.(((((..(((((..(.((((((...)))))))))))).))))).))))))))))).)))))).)
)).))))..)))))..........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
[2] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GAAGAGGCGCAAAGGCATCATTGAGTGCAGCGTTGATGAACAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGCTGCACACAGTGACG
CCCTTGCATTCTCTGGCCCGATTC
dot-bracket secondary structure
..(((((.((((.(((.((((((.(((((((((((.(((((..(((((..(.((((((...)))))))))))).))))).))))))))))).)))))).)
)).))))..)))))..........
SIMILARITIES| miRBase bdi-MIR397b: 3e-66 PMRD bdi-miR397: 3e-66 microPC miR397: 0.000006 | UniProt no hits RFAM MIR397: 0.000000002 |
Identical with: bdi-MIR397b from miRBase (MNEST041798) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
[2] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
