ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR397
source: miRBase, original name: bdi-MIR397b (MI0018099)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGAGTGCAGCGTTGATGAA miRNA* CACCGGCGCTGCACACAGTGA mismatches: 2 bulges: 0 |
pre-miRNA
GCGAAGAGGAATTAGAAGAGGCGCAAAGGCATCATTGAGTGCAGCGTTGATGAACAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGC
TGCACACAGTGACGCCCTTGCATTCTCTGGCCCGATTCATTTGTGTGCGAAGAGGAATTAGAAGAGGCGCAAAGGCATCATTGAGTGCAGCGTTGATGAA
CAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGCTGCACACAGTGACGCCCTTGCATTCTCTGGCCCGATTCATTTGTGT
dot-bracket secondary structure
(((((...((((..(.(((((.((((.(((.((((((.(((((((((((.(((((..(((((..(.(((((((.(((((((((((((.(((((.((((((
(((((.((((((.(((.((((..(((((...(..((((.((((....))))...))))..).))))).)))).))).)))))).))))))))))).))))
)..)))))..).))))))).))))))))))))).))))).))))))))))).)))))).))).))))..)))))...)..)))).)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GCGAAGAGGAATTAGAAGAGGCGCAAAGGCATCATTGAGTGCAGCGTTGATGAACAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGC
TGCACACAGTGACGCCCTTGCATTCTCTGGCCCGATTCATTTGTGTGCGAAGAGGAATTAGAAGAGGCGCAAAGGCATCATTGAGTGCAGCGTTGATGAA
CAGGGGCCAGGCGACCGGCGGCCGGTCCGGTTCGGTTCACCGGCGCTGCACACAGTGACGCCCTTGCATTCTCTGGCCCGATTCATTTGTGT
dot-bracket secondary structure
(((((...((((..(.(((((.((((.(((.((((((.(((((((((((.(((((..(((((..(.(((((((.(((((((((((((.(((((.((((((
(((((.((((((.(((.((((..(((((...(..((((.((((....))))...))))..).))))).)))).))).)))))).))))))))))).))))
)..)))))..).))))))).))))))))))))).))))).))))))))))).)))))).))).))))..)))))...)..)))).)))))..
SIMILARITIES| miRBase bdi-MIR397a: 8e-66 PMRD bdi-miR397: 8e-66 microPC miR397: 0.00002 | UniProt no hits RFAM MIR397: 0.000000005 |
Identical with: bdi-MIR397a from miRBase (MNEST041797) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
