ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR398
source: miRBase, original name: bdi-MIR398a (MI0018116)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGGTCGAATTGGGAACACATG mismatches: 2 bulges: 0 |
pre-miRNA
AAGAACAGACAGCACATGCGAGGAAGTTCCTGCAGGGTCGAATTGGGAACACATGAGATGGATGGTCCGCTGAGCTCTGAGCTCGAGCTCGGCCATGTGT
TCTCAGGTCGCCCCTGTTGGGTCTTCCGTGCCATGGATTGATGATTGCCT
dot-bracket secondary structure
.....((..(((..((((((.(((((..((.((((((.(((.(((((((((((((....((.....))(((((((((.......))))))))))))))))
)))))).))).)))))).))..))))).)).))))..))).)).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
AAGAACAGACAGCACATGCGAGGAAGTTCCTGCAGGGTCGAATTGGGAACACATGAGATGGATGGTCCGCTGAGCTCTGAGCTCGAGCTCGGCCATGTGT
TCTCAGGTCGCCCCTGTTGGGTCTTCCGTGCCATGGATTGATGATTGCCT
dot-bracket secondary structure
.....((..(((..((((((.(((((..((.((((((.(((.(((((((((((((....((.....))(((((((((.......))))))))))))))))
)))))).))).)))))).))..))))).)).))))..))).)).......
SIMILARITIES| miRBase bdi-MIR398c: 3e-70 PMRD aqc-miR398b: 0.000002 microPC miR398: 0.000007 | UniProt no hits RFAM MIR398: 0.0001 |
Identical with: bdi-MIR398c from miRBase (MNEST041801) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
