ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR398
source: miRBase, original name: bdi-MIR398b (MI0018150)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGGAGTGTCACTGAGAACACA miRNA* TGTTCTCAGGTCACCCCTTTG mismatches: 3 bulges: 1 |
pre-miRNA
GGATGGGATGCAATTGAGGGAAGCTGAACCCACAGGAGTGTCACTGAGAACACAGGTGCAGATGCCAATGCATGGTGAGTTTTCATTTTTGCATCGCAAT
TGTGTTCTCAGGTCACCCCTTTGGGTTGCTTCCCTTGATTCCATGGCCAGGTTATGTGTCATG
dot-bracket secondary structure
...........(((..((((((((..((((((.(((.(((.(.((((((((((((.(((.(((((.((...((((.......)))).)).)))))))).)
)))))))))))).))).))).))))))))))))))..))).((((((((.....)).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
GGATGGGATGCAATTGAGGGAAGCTGAACCCACAGGAGTGTCACTGAGAACACAGGTGCAGATGCCAATGCATGGTGAGTTTTCATTTTTGCATCGCAAT
TGTGTTCTCAGGTCACCCCTTTGGGTTGCTTCCCTTGATTCCATGGCCAGGTTATGTGTCATG
dot-bracket secondary structure
...........(((..((((((((..((((((.(((.(((.(.((((((((((((.(((.(((((.((...((((.......)))).)).)))))))).)
)))))))))))).))).))).))))))))))))))..))).((((((((.....)).))))))
SIMILARITIES| miRBase osa-MIR398a: 0.00000003 PMRD osa-miR398a: 0.00000003 microPC miR398: 0.00003 | UniProt no hits RFAM MIR398: 0.0000006 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
