ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR398
source: miRBase, original name: bdi-MIR398c (MI0018228)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGGTCGAATTGGGAACACATG mismatches: 2 bulges: 0 |
pre-miRNA
CAGCACATGCGAGGAAGTTCCTGCAGGGTCGAATTGGGAACACATGAGATGGATGGTCCGCTGAGCTCTGAGCTCGAGCTCGGCCATGTGTTCTCAGGTC
GCCCCTGTTGGGTCTTCCGTGCCATGGATTG
dot-bracket secondary structure
(((..((((((.(((((..((.((((((.(((.(((((((((((((....((.....))(((((((((.......)))))))))))))))))))))).))
).)))))).))..))))).)).))))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
CAGCACATGCGAGGAAGTTCCTGCAGGGTCGAATTGGGAACACATGAGATGGATGGTCCGCTGAGCTCTGAGCTCGAGCTCGGCCATGTGTTCTCAGGTC
GCCCCTGTTGGGTCTTCCGTGCCATGGATTG
dot-bracket secondary structure
(((..((((((.(((((..((.((((((.(((.(((((((((((((....((.....))(((((((((.......)))))))))))))))))))))).))
).)))))).))..))))).)).))))..)))
SIMILARITIES| miRBase bdi-MIR398a: 2e-70 PMRD aqc-miR398b: 0.000002 microPC miR398: 0.000006 | UniProt no hits RFAM MIR398: 0.0001 |
Identical with: bdi-MIR398a from miRBase (MNEST041799) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Zhang J, Xu Y, Huan Q, Chong K, BMC Genomics. 10:449(2009)., "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response"
