ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR399
source: miRBase, original name: bdi-MIR399 (MI0011572)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTACCCTG miRNA* GTGCAGTTCTCCTCTGGCATG mismatches: 3 bulges: 0 |
pre-miRNA
CAGTGCAGTTCTCCTCTGGCATGGATGCTAATGTAGCAGGCCCTGCACAATGGACTATGCTATCACTGTCCCTGCCAAAGGAGAATTACCCTGCCAGTGC
dot-bracket secondary structure
(((.(.(((((((((.(((((.((((......((((((((.((........)).)).))))))....)))).))))).))))))))).).))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
CAGTGCAGTTCTCCTCTGGCATGGATGCTAATGTAGCAGGCCCTGCACAATGGACTATGCTATCACTGTCCCTGCCAAAGGAGAATTACCCTGCCAGTGC
dot-bracket secondary structure
(((.(.(((((((((.(((((.((((......((((((((.((........)).)).))))))....)))).))))).))))))))).).))).......
SIMILARITIES| miRBase sbi-MIR399h: 0.000000005 PMRD bdi-miR399: 5e-52 microPC no hits | UniProt no hits RFAM mir-399: 0.00000000009 |
Identical with: bdi-miR399 from PMRD (MNEST048316) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
