ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR399
source: miRBase, original name: bdi-MIR399b (MI0018103)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAATTGCCCTG miRNA* GTGCGGTTCTCCTCTGGCACG mismatches: 2 bulges: 0 |
pre-miRNA
CGTGTTATTGAGATGAGGGTGAGAATTACAGTGCGGTTCTCCTCTGGCACGGAGGTCGAGGGTAGCCGGCGGCAATCCGGCCAGCGGCGAGGCTGCCAGT
CCGTCCCCTTGCCAAAGGAGAATTGCCCTGCCATTCATAACCCTCCTGGGTTTATACATA
dot-bracket secondary structure
.((((.(((.((..((((((..((((..(((.(((((((((((.(((((.((.((.((..(((((((.((.((..........)).))..)))))))...
.)).)))).))))).))))))))))).)))..))))...)))))))).)))..))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
CGTGTTATTGAGATGAGGGTGAGAATTACAGTGCGGTTCTCCTCTGGCACGGAGGTCGAGGGTAGCCGGCGGCAATCCGGCCAGCGGCGAGGCTGCCAGT
CCGTCCCCTTGCCAAAGGAGAATTGCCCTGCCATTCATAACCCTCCTGGGTTTATACATA
dot-bracket secondary structure
.((((.(((.((..((((((..((((..(((.(((((((((((.(((((.((.((.((..(((((((.((.((..........)).))..)))))))...
.)).)))).))))).))))))))))).)))..))))...)))))))).)))..))))...
SIMILARITIES| miRBase zma-MIR399a: 0.000000000002 PMRD zma-miR399a: 0.000000000002 microPC miR399: 0.00003 | UniProt no hits RFAM mir-399: 0.00000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
