ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR437
source: miRBase, original name: bdi-MIR437 (MI0011573)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAACTTAGAGAAGTTTGACTT miRNA* GTCGAACTTAGAGAAGTTTGA mismatches: 5 bulges: 0 |
pre-miRNA
TAAAGACAATATGAATACATATATTTCATTATGGATAAAATGAAACTAATTTGGTGTCATAAGTCTTGGTATATTTGTCTAAAAGATTGGTCGAACTTAG
AGAAGTTTGACTTAAGACAAACATAAATGTTGTACTCCCTC
dot-bracket secondary structure
..(((((..(((((...((....(((((((........)))))))......))...))))).))))).((((((((((((........((((((((((..
..))))))))))..))))))).........)))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
TAAAGACAATATGAATACATATATTTCATTATGGATAAAATGAAACTAATTTGGTGTCATAAGTCTTGGTATATTTGTCTAAAAGATTGGTCGAACTTAG
AGAAGTTTGACTTAAGACAAACATAAATGTTGTACTCCCTC
dot-bracket secondary structure
..(((((..(((((...((....(((((((........)))))))......))...))))).))))).((((((((((((........((((((((((..
..))))))))))..))))))).........)))))......
SIMILARITIES| miRBase sbi-MIR437k: 0.000002 PMRD bdi-miR437: 3e-76 microPC no hits | UniProt no hits RFAM no hits |
Identical with: bdi-miR437 from PMRD (MNEST048318) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
